I once faced a similar problem with a few Samsung CD-Rs, viz the reflective layer bubbling up.(Mfrg defect I think-8 out of 10 CDs had the bubbling prob, & they were labelled "Premium"quality !)
In such cases, hold the reflective side at an angle to the light : in a CD-R you can see till where the CD has been written.
If the bubbling is after the point till where data was written, then ,as I did, remove the bubbled portion & copy the data onto a better quality disc.
If the bubbling is smack in the middle of the data, use the CD as a coaster.
If there is no bubbling, see if you can gently remove the fungus using a soft cloth dipped in a mild soap solution.If successful, then copy the disc rightaway.
AND, as the guy suggests in the article, always keep your discs clean & in a good protective case.